J3_6FYX_002
3D structure
- PDB id
- 6FYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6FYX|1|2|C|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FYX_002 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.105
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6FYX|1|2|A|880
6FYX|1|2|U|881
6FYX|1|2|C|882
6FYX|1|2|A|883
*
6FYX|1|2|U|927
6FYX|1|2|A|928
6FYX|1|2|A|929
6FYX|1|2|C|930
6FYX|1|2|U|931
6FYX|1|2|A|932
6FYX|1|2|C|933
6FYX|1|2|U|934
6FYX|1|2|G|935
*
6FYX|1|2|C|942
6FYX|1|2|A|943
6FYX|1|2|U|944
6FYX|1|2|U|945
6FYX|1|2|U|946
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S1
- Chain N
- KLLA0F18040p
- Chain O
- 40S ribosomal protein S14
- Chain a
- 40S ribosomal protein S26
Coloring options: