J3_6FYX_008
3D structure
- PDB id
- 6FYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FYX_008 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.371
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6FYX|1|2|U|1282
6FYX|1|2|C|1283
6FYX|1|2|U|1284
6FYX|1|2|U|1285
6FYX|1|2|A|1286
6FYX|1|2|G|1287
*
6FYX|1|2|C|1326
6FYX|1|2|G|1327
6FYX|1|2|A|1328
6FYX|1|2|G|1329
6FYX|1|2|A|1330
6FYX|1|2|C|1331
*
6FYX|1|2|G|1417
6FYX|1|2|C|1418
6FYX|1|2|A|1419
6FYX|1|2|A|1420
6FYX|1|2|U|1421
6FYX|1|2|A|1422
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- KLLA0F09812p
- Chain D
- KLLA0D08305p
- Chain Q
- 40S ribosomal protein S16
- Chain R
- KLLA0B01474p
- Chain U
- KLLA0F25542p
- Chain d
- 40S ribosomal protein S29
- Chain i
- Eukaryotic translation initiation factor 1A
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