J3_6FYX_014

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCCUUG*CAU

Length

26 nucleotides

Bulged bases

6FYX|1|2|U|237, 6FYX|1|2|C|238, 6FYX|1|2|C|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYX|1|2|A|212
6FYX|1|2|G|213
6FYX|1|2|A|214
6FYX|1|2|U|215
6FYX|1|2|A|216
6FYX|1|2|A|217
6FYX|1|2|A|218
6FYX|1|2|A|219
6FYX|1|2|A|220
6FYX|1|2|A|221
6FYX|1|2|U|222
6FYX|1|2|C|223
6FYX|1|2|A|224
6FYX|1|2|A|225
6FYX|1|2|U|226
6FYX|1|2|G|227
*
6FYX|1|2|C|236
6FYX|1|2|U|237
6FYX|1|2|C|238
6FYX|1|2|C|239
6FYX|1|2|U|240
6FYX|1|2|U|241
6FYX|1|2|G|242
*
6FYX|1|2|C|249
6FYX|1|2|A|250
6FYX|1|2|U|251

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p