J3_6FYX_015

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAAAAAUUAGAG*CAG*UCGAAUAUAUUAGC

Length

30 nucleotides

Bulged bases

6FYX|1|2|U|793, 6FYX|1|2|U|794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYX|1|2|G|751
6FYX|1|2|A|752
6FYX|1|2|A|753
6FYX|1|2|A|754
6FYX|1|2|A|755
6FYX|1|2|A|756
6FYX|1|2|A|757
6FYX|1|2|U|758
6FYX|1|2|U|759
6FYX|1|2|A|760
6FYX|1|2|G|761
6FYX|1|2|A|762
6FYX|1|2|G|763
*
6FYX|1|2|C|773
6FYX|1|2|A|774
6FYX|1|2|G|775
*
6FYX|1|2|U|784
6FYX|1|2|C|785
6FYX|1|2|G|786
6FYX|1|2|A|787
6FYX|1|2|A|788
6FYX|1|2|U|789
6FYX|1|2|A|790
6FYX|1|2|U|791
6FYX|1|2|A|792
6FYX|1|2|U|793
6FYX|1|2|U|794
6FYX|1|2|A|795
6FYX|1|2|G|796
6FYX|1|2|C|797

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain L

KLLA0A10483p

Chain W

40S ribosomal protein S22

Chain Y

40S ribosomal protein S24