3D structure

PDB id
6FYY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.02 Å

Loop

Sequence
AUCA*UAACUACUG*CAUUU
Length
18 nucleotides
Bulged bases
6FYY|1|2|C|933
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6FYY_002 not in the Motif Atlas
Homologous match to J3_4V88_033
Geometric discrepancy: 0.107
The information below is about J3_4V88_033
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_38616.1
Basepair signature
cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
Number of instances in this motif group
1

Unit IDs

6FYY|1|2|A|880
6FYY|1|2|U|881
6FYY|1|2|C|882
6FYY|1|2|A|883
*
6FYY|1|2|U|927
6FYY|1|2|A|928
6FYY|1|2|A|929
6FYY|1|2|C|930
6FYY|1|2|U|931
6FYY|1|2|A|932
6FYY|1|2|C|933
6FYY|1|2|U|934
6FYY|1|2|G|935
*
6FYY|1|2|C|942
6FYY|1|2|A|943
6FYY|1|2|U|944
6FYY|1|2|U|945
6FYY|1|2|U|946

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain B
40S ribosomal protein S1
Chain N
KLLA0F18040p
Chain O
40S ribosomal protein S14
Chain a
40S ribosomal protein S26

Coloring options:


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