3D structure

PDB id
6FYY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.02 Å

Loop

Sequence
CUUAAUUU*GGGGAAACUCAC*GGCCG
Length
25 nucleotides
Bulged bases
6FYY|1|2|G|1198, 6FYY|1|2|G|1200, 6FYY|1|2|A|1202
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6FYY_006 not in the Motif Atlas
Homologous match to J3_8C3A_040
Geometric discrepancy: 0.0802
The information below is about J3_8C3A_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.3
Basepair signature
cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

6FYY|1|2|C|1179
6FYY|1|2|U|1180
6FYY|1|2|U|1181
6FYY|1|2|A|1182
6FYY|1|2|A|1183
6FYY|1|2|U|1184
6FYY|1|2|U|1185
6FYY|1|2|U|1186
*
6FYY|1|2|G|1197
6FYY|1|2|G|1198
6FYY|1|2|G|1199
6FYY|1|2|G|1200
6FYY|1|2|A|1201
6FYY|1|2|A|1202
6FYY|1|2|A|1203
6FYY|1|2|C|1204
6FYY|1|2|U|1205
6FYY|1|2|C|1206
6FYY|1|2|A|1207
6FYY|1|2|C|1208
*
6FYY|1|2|G|1452
6FYY|1|2|G|1453
6FYY|1|2|C|1454
6FYY|1|2|C|1455
6FYY|1|2|G|1456

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain P
KLLA0F07843p
Chain S
KLLA0B01562p
Chain U
KLLA0F25542p
Chain d
40S ribosomal protein S29
Chain f
Ubiquitin-40S ribosomal protein S27a
Chain i
Eukaryotic translation initiation factor 1A

Coloring options:


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