J3_6FYY_014

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCCUUG*CAU

Length

26 nucleotides

Bulged bases

6FYY|1|2|C|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYY|1|2|A|212
6FYY|1|2|G|213
6FYY|1|2|A|214
6FYY|1|2|U|215
6FYY|1|2|A|216
6FYY|1|2|A|217
6FYY|1|2|A|218
6FYY|1|2|A|219
6FYY|1|2|A|220
6FYY|1|2|A|221
6FYY|1|2|U|222
6FYY|1|2|C|223
6FYY|1|2|A|224
6FYY|1|2|A|225
6FYY|1|2|U|226
6FYY|1|2|G|227
*
6FYY|1|2|C|236
6FYY|1|2|U|237
6FYY|1|2|C|238
6FYY|1|2|C|239
6FYY|1|2|U|240
6FYY|1|2|U|241
6FYY|1|2|G|242
*
6FYY|1|2|C|249
6FYY|1|2|A|250
6FYY|1|2|U|251

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p