J3_6FYY_017

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UAGAG*CAG*UCGAAUA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYY|1|2|U|759
6FYY|1|2|A|760
6FYY|1|2|G|761
6FYY|1|2|A|762
6FYY|1|2|G|763
*
6FYY|1|2|C|773
6FYY|1|2|A|774
6FYY|1|2|G|775
*
6FYY|1|2|U|784
6FYY|1|2|C|785
6FYY|1|2|G|786
6FYY|1|2|A|787
6FYY|1|2|A|788
6FYY|1|2|U|789
6FYY|1|2|A|790

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain Y

40S ribosomal protein S24