J3_6G5I_007

3D structure

PDB id

6G5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State R

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUAAUUUG*CGGGAAACCUCAC*GGCUG

Length

27 nucleotides

Bulged bases

6G5I|1|2|A|1240, 6G5I|1|2|G|1256, 6G5I|1|2|A|1258, 6G5I|1|2|A|1260, 6G5I|1|2|U|1519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6G5I|1|2|C|1237
6G5I|1|2|U|1238
6G5I|1|2|U|1239
6G5I|1|2|A|1240
6G5I|1|2|A|1241
6G5I|1|2|U|1242
6G5I|1|2|U|1243
6G5I|1|2|U|1244
6G5I|1|2|G|1245
*
6G5I|1|2|C|1254
6G5I|1|2|G|1255
6G5I|1|2|G|1256
6G5I|1|2|G|1257
6G5I|1|2|A|1258
6G5I|1|2|A|1259
6G5I|1|2|A|1260
6G5I|1|2|C|1261
6G5I|1|2|C|1262
6G5I|1|2|U|1263
6G5I|1|2|C|1264
6G5I|1|2|A|1265
6G5I|1|2|C|1266
*
6G5I|1|2|G|1516
6G5I|1|2|G|1517
6G5I|1|2|C|1518
6G5I|1|2|U|1519
6G5I|1|2|G|1520

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain Q

40S ribosomal protein S16

Chain S

40S ribosomal protein S18

Chain U

40S ribosomal protein S20

Chain d

40S ribosomal protein S29