J3_6G7Z_001

3D structure

PDB id

6G7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lariat-capping ribozyme with a shortened DP2 stem loop

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GUAUC*GAAG*CAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6G7Z_001 not in the Motif Atlas

Geometric match to J3_6GYV_001

Geometric discrepancy: 0.0975

The information below is about J3_6GYV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_73870.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6G7Z|1|A|G|7
6G7Z|1|A|U|8
6G7Z|1|A|A|9
6G7Z|1|A|U|10
6G7Z|1|A|C|11
*
6G7Z|1|A|G|36
6G7Z|1|A|A|37
6G7Z|1|A|A|38
6G7Z|1|A|G|39
*
6G7Z|1|A|C|63
6G7Z|1|A|A|64
6G7Z|1|A|A|65
6G7Z|1|A|U|66

Current chains

Chain A

Lariat-capping ribozyme

Nearby chains

Chain B

Lariat-capping ribozyme