J3_6GAW_005

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUAAUC*GAUAGACCUUAC*GAAA

Length

23 nucleotides

Bulged bases

6GAW|1|AA|U|580, 6GAW|1|AA|A|581, 6GAW|1|AA|A|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GAW|1|AA|U|561
6GAW|1|AA|A|562
6GAW|1|AA|U|563
6GAW|1|AA|A|564
6GAW|1|AA|A|565
6GAW|1|AA|U|566
6GAW|1|AA|C|567
*
6GAW|1|AA|G|578
6GAW|1|AA|A|579
6GAW|1|AA|U|580
6GAW|1|AA|A|581
6GAW|1|AA|G|582
6GAW|1|AA|A|583
6GAW|1|AA|C|584
6GAW|1|AA|C|585
6GAW|1|AA|U|586
6GAW|1|AA|U|587
6GAW|1|AA|A|588
6GAW|1|AA|C|589
*
6GAW|1|AA|G|706
6GAW|1|AA|A|707
6GAW|1|AA|A|708
6GAW|1|AA|A|709

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AJ

Mitochondrial ribosomal protein S10

Chain AN

Mitochondrial ribosomal protein S14