J3_6GAW_016

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAG*CUAUAGAGAUAGUAC*GGAAAG

Length

25 nucleotides

Bulged bases

6GAW|1|BA|U|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GAW|1|BA|C|8
6GAW|1|BA|U|9
6GAW|1|BA|A|10
6GAW|1|BA|G|11
*
6GAW|1|BA|C|106
6GAW|1|BA|U|107
6GAW|1|BA|A|108
6GAW|1|BA|U|109
6GAW|1|BA|A|110
6GAW|1|BA|G|111
6GAW|1|BA|A|112
6GAW|1|BA|G|113
6GAW|1|BA|A|114
6GAW|1|BA|U|115
6GAW|1|BA|A|116
6GAW|1|BA|G|117
6GAW|1|BA|U|118
6GAW|1|BA|A|119
6GAW|1|BA|C|120
*
6GAW|1|BA|G|127
6GAW|1|BA|G|128
6GAW|1|BA|A|129
6GAW|1|BA|A|130
6GAW|1|BA|A|131
6GAW|1|BA|G|132

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B2

Mitochondrial ribosomal protein L47

Chain B7

Mitochondrial ribosomal protein L34

Chain BF

Mitochondrial ribosomal protein L4

Chain BU

Mitochondrial ribosomal protein L20

Chain BX

uL23m

Chain BY

39S ribosomal protein L24, mitochondrial

Chain Be

Mitochondrial ribosomal protein L41

Chain Bh

39S ribosomal protein L44, mitochondrial

Chain Bi

mL45

Chain Bn

Mitochondrial ribosomal protein L51