J3_6GAZ_001

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUCU*AUUAG*CAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GAZ|1|AA|U|31
6GAZ|1|AA|U|32
6GAZ|1|AA|C|33
6GAZ|1|AA|U|34
*
6GAZ|1|AA|A|222
6GAZ|1|AA|U|223
6GAZ|1|AA|U|224
6GAZ|1|AA|A|225
6GAZ|1|AA|G|226
*
6GAZ|1|AA|C|271
6GAZ|1|AA|A|272
6GAZ|1|AA|A|273
6GAZ|1|AA|A|274

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain Ap

28S ribosomal protein S18b, mitochondrial

Chain BC

Translation initiation factor IF-2, mitochondrial