J3_6GAZ_005

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUAAUC*GAUAGACCUUAC*GAAA

Length

23 nucleotides

Bulged bases

6GAZ|1|AA|U|580, 6GAZ|1|AA|A|581, 6GAZ|1|AA|A|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GAZ|1|AA|U|561
6GAZ|1|AA|A|562
6GAZ|1|AA|U|563
6GAZ|1|AA|A|564
6GAZ|1|AA|A|565
6GAZ|1|AA|U|566
6GAZ|1|AA|C|567
*
6GAZ|1|AA|G|578
6GAZ|1|AA|A|579
6GAZ|1|AA|U|580
6GAZ|1|AA|A|581
6GAZ|1|AA|G|582
6GAZ|1|AA|A|583
6GAZ|1|AA|C|584
6GAZ|1|AA|C|585
6GAZ|1|AA|U|586
6GAZ|1|AA|U|587
6GAZ|1|AA|A|588
6GAZ|1|AA|C|589
*
6GAZ|1|AA|G|706
6GAZ|1|AA|A|707
6GAZ|1|AA|A|708
6GAZ|1|AA|A|709

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AJ

Mitochondrial ribosomal protein S10

Chain AN

Mitochondrial ribosomal protein S14