J3_6GAZ_006

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GAZ_006 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.1394

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6GAZ|1|AA|C|595
6GAZ|1|AA|U|596
6GAZ|1|AA|U|597
6GAZ|1|AA|G|598
*
6GAZ|1|AA|C|605
6GAZ|1|AA|A|606
6GAZ|1|AA|G|607
*
6GAZ|1|AA|C|695
6GAZ|1|AA|U|696
6GAZ|1|AA|U|697
6GAZ|1|AA|A|698
6GAZ|1|AA|U|699
6GAZ|1|AA|G|700

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AE

Mitochondrial ribosomal protein S5

Chain AN

Mitochondrial ribosomal protein S14

Chain Ai

Mitochondrial ribosomal protein S33