J3_6GBZ_009

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAAGACC*GGAG*CGUCC

Length

18 nucleotides

Bulged bases

6GBZ|1|A|A|2059, 6GBZ|1|A|G|2061

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GBZ|1|A|G|2056
6GBZ|1|A|G|2057
6GBZ|1|A|A|2058
6GBZ|1|A|A|2059
6GBZ|1|A|A|2060
6GBZ|1|A|G|2061
6GBZ|1|A|A|2062
6GBZ|1|A|C|2063
6GBZ|1|A|C|2064
*
6GBZ|1|A|G|2446
6GBZ|1|A|G|2447
6GBZ|1|A|A|2448
6GBZ|1|A|G|2454
*
6GBZ|1|A|C|2498
6GBZ|1|A|G|2608
6GBZ|1|A|U|2609
6GBZ|1|A|C|2610
6GBZ|1|A|C|2611

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain S

50S ribosomal protein L22