J3_6GC6_002

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6GC6|1|A|U|686, 6GC6|1|A|A|792, 6GC6|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GC6_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1455

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6GC6|1|A|U|683
6GC6|1|A|G|684
6GC6|1|A|A|685
6GC6|1|A|U|686
6GC6|1|A|C|687
6GC6|1|A|U|688
6GC6|1|A|A|689
*
6GC6|1|A|U|773
6GC6|1|A|G|774
6GC6|1|A|G|775
*
6GC6|1|A|C|791
6GC6|1|A|A|792
6GC6|1|A|A|793
6GC6|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2