J3_6GC6_005

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CAAGG*CCCCAAAC*GUG

Length

16 nucleotides

Bulged bases

6GC6|1|A|C|1607, 6GC6|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GC6|1|A|C|1306
6GC6|1|A|A|1307
6GC6|1|A|A|1308
6GC6|1|A|G|1309
6GC6|1|A|G|1310
*
6GC6|1|A|C|1604
6GC6|1|A|C|1605
6GC6|1|A|C|1606
6GC6|1|A|C|1607
6GC6|1|A|A|1608
6GC6|1|A|A|1609
6GC6|1|A|A|1610
6GC6|1|A|C|1611
*
6GC6|1|A|G|1620
6GC6|1|A|U|1621
6GC6|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34