J3_6GC7_009

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6GC7|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GC7_009 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1521

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6GC7|1|A|G|297
6GC7|1|A|G|298
6GC7|1|A|A|299
6GC7|1|A|A|300
6GC7|1|A|G|301
*
6GC7|1|A|C|316
6GC7|1|A|G|317
6GC7|1|A|C|318
6GC7|1|A|G|319
6GC7|1|A|A|320
6GC7|1|A|U|321
6GC7|1|A|A|322
6GC7|1|A|C|323
6GC7|1|A|A|324
6GC7|1|A|G|325
*
6GC7|1|A|C|337
6GC7|1|A|G|338
6GC7|1|A|U|339
6GC7|1|A|A|340
6GC7|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24