J3_6GQ1_005

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UAG*CGUAGC*GUCGA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQ1|1|1|U|829
6GQ1|1|1|A|830
6GQ1|1|1|G|831
*
6GQ1|1|1|C|863
6GQ1|1|1|G|864
6GQ1|1|1|U|865
6GQ1|1|1|A|866
6GQ1|1|1|G|867
6GQ1|1|1|C|868
*
6GQ1|1|1|G|891
6GQ1|1|1|U|892
6GQ1|1|1|C|893
6GQ1|1|1|G|894
6GQ1|1|1|A|895

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain R

60S ribosomal protein L19-A

Chain g

60S ribosomal protein L34-A

Chain j

60S ribosomal protein L37-A