J3_6GQ1_025
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 6GQ1|1|2|G|1199, 6GQ1|1|2|G|1201, 6GQ1|1|2|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GQ1_025 not in the Motif Atlas
- Geometric match to J3_4LFB_004
- Geometric discrepancy: 0.2449
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6GQ1|1|2|C|1180
6GQ1|1|2|U|1181
6GQ1|1|2|U|1182
6GQ1|1|2|A|1183
6GQ1|1|2|A|1184
6GQ1|1|2|U|1185
6GQ1|1|2|U|1186
6GQ1|1|2|U|1187
*
6GQ1|1|2|G|1198
6GQ1|1|2|G|1199
6GQ1|1|2|G|1200
6GQ1|1|2|G|1201
6GQ1|1|2|A|1202
6GQ1|1|2|A|1203
6GQ1|1|2|A|1204
6GQ1|1|2|C|1205
6GQ1|1|2|U|1206
6GQ1|1|2|C|1207
6GQ1|1|2|A|1208
6GQ1|1|2|C|1209
*
6GQ1|1|2|G|1454
6GQ1|1|2|G|1455
6GQ1|1|2|C|1456
6GQ1|1|2|C|1457
6GQ1|1|2|G|1458
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AA
- 40S ribosomal protein S10-A
- Chain AF
- 40S ribosomal protein S15
- Chain AI
- 40S ribosomal protein S18-A
- Chain AK
- 40S ribosomal protein S20
- Chain AT
- 40S ribosomal protein S29-A
Coloring options: