J3_6GQ1_026

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CCAGAC*GGGUGG*CUUAGACG

Length

20 nucleotides

Bulged bases

6GQ1|1|2|G|1445, 6GQ1|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQ1|1|2|C|1215
6GQ1|1|2|C|1216
6GQ1|1|2|A|1217
6GQ1|1|2|G|1218
6GQ1|1|2|A|1219
6GQ1|1|2|C|1220
*
6GQ1|1|2|G|1263
6GQ1|1|2|G|1264
6GQ1|1|2|G|1265
6GQ1|1|2|U|1266
6GQ1|1|2|G|1267
6GQ1|1|2|G|1268
*
6GQ1|1|2|C|1441
6GQ1|1|2|U|1442
6GQ1|1|2|U|1443
6GQ1|1|2|A|1444
6GQ1|1|2|G|1445
6GQ1|1|2|A|1446
6GQ1|1|2|C|1447
6GQ1|1|2|G|1448

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S10-A

Chain AT

40S ribosomal protein S29-A

Chain AZ

Elongation factor 2