J3_6GQ1_029

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UAAC*GGAC*GUUUG

Length

13 nucleotides

Bulged bases

6GQ1|1|2|U|1413, 6GQ1|1|2|U|1414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQ1|1|2|U|1335
6GQ1|1|2|A|1336
6GQ1|1|2|A|1337
6GQ1|1|2|C|1338
*
6GQ1|1|2|G|1386
6GQ1|1|2|G|1387
6GQ1|1|2|A|1388
6GQ1|1|2|C|1389
*
6GQ1|1|2|G|1412
6GQ1|1|2|U|1413
6GQ1|1|2|U|1414
6GQ1|1|2|U|1415
6GQ1|1|2|G|1416

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AH

40S ribosomal protein S17-B

Chain AK

40S ribosomal protein S20

Chain AT

40S ribosomal protein S29-A

Chain AV

Guanine nucleotide-binding protein subunit beta-like protein

Chain v

40S ribosomal protein S5