J3_6GQ1_035
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- UGAAGUG*CAAG*CUCUA
- Length
- 16 nucleotides
- Bulged bases
- 6GQ1|1|1|A|1482, 6GQ1|1|1|U|1484
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQ1|1|1|U|1479
6GQ1|1|1|G|1480
6GQ1|1|1|A|1481
6GQ1|1|1|A|1482
6GQ1|1|1|G|1483
6GQ1|1|1|U|1484
6GQ1|1|1|G|1485
*
6GQ1|1|1|C|1857
6GQ1|1|1|A|1858
6GQ1|1|1|A|1859
6GQ1|1|1|G|1860
*
6GQ1|1|1|C|1870
6GQ1|1|1|U|1871
6GQ1|1|1|C|1872
6GQ1|1|1|U|1873
6GQ1|1|1|A|1874
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain g
- 60S ribosomal protein L34-A
Coloring options: