3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
UGAAGUG*CAAG*CUCUA
Length
16 nucleotides
Bulged bases
6GQ1|1|1|A|1482, 6GQ1|1|1|U|1484
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GQ1|1|1|U|1479
6GQ1|1|1|G|1480
6GQ1|1|1|A|1481
6GQ1|1|1|A|1482
6GQ1|1|1|G|1483
6GQ1|1|1|U|1484
6GQ1|1|1|G|1485
*
6GQ1|1|1|C|1857
6GQ1|1|1|A|1858
6GQ1|1|1|A|1859
6GQ1|1|1|G|1860
*
6GQ1|1|1|C|1870
6GQ1|1|1|U|1871
6GQ1|1|1|C|1872
6GQ1|1|1|U|1873
6GQ1|1|1|A|1874

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain R
60S ribosomal protein L19-A
Chain g
60S ribosomal protein L34-A

Coloring options:

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