J3_6GQ1_039

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6GQ1|1|2|A|217, 6GQ1|1|2|C|239, 6GQ1|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQ1|1|2|A|213
6GQ1|1|2|G|214
6GQ1|1|2|A|215
6GQ1|1|2|U|216
6GQ1|1|2|A|217
6GQ1|1|2|A|218
6GQ1|1|2|A|219
6GQ1|1|2|A|220
6GQ1|1|2|A|221
6GQ1|1|2|A|222
6GQ1|1|2|U|223
6GQ1|1|2|C|224
6GQ1|1|2|A|225
6GQ1|1|2|A|226
6GQ1|1|2|U|227
6GQ1|1|2|G|228
*
6GQ1|1|2|C|237
6GQ1|1|2|U|238
6GQ1|1|2|C|239
6GQ1|1|2|U|240
6GQ1|1|2|U|241
6GQ1|1|2|U|242
6GQ1|1|2|G|243
*
6GQ1|1|2|C|250
6GQ1|1|2|A|251
6GQ1|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A

Chain u

40S ribosomal protein S4-A

Chain w

40S ribosomal protein S6-A