J3_6GQV_021

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCA*UAGUAA*UGAUUACG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|2|C|1161
6GQV|1|2|C|1162
6GQV|1|2|A|1163
*
6GQV|1|2|U|1582
6GQV|1|2|A|1583
6GQV|1|2|G|1584
6GQV|1|2|U|1585
6GQV|1|2|A|1586
6GQV|1|2|A|1587
*
6GQV|1|2|U|1609
6GQV|1|2|G|1610
6GQV|1|2|A|1611
6GQV|1|2|U|1612
6GQV|1|2|U|1613
6GQV|1|2|A|1614
6GQV|1|2|C|1615
6GQV|1|2|G|1616

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AS

40S ribosomal protein S28-A

Chain v

40S ribosomal protein S5