J3_6GQV_023
3D structure
- PDB id
- 6GQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUUAAUUUG*CGGGGAAACUCAC*GGCCG
- Length
- 27 nucleotides
- Bulged bases
- 6GQV|1|2|G|1199, 6GQV|1|2|G|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQV|1|2|C|1180
6GQV|1|2|U|1181
6GQV|1|2|U|1182
6GQV|1|2|A|1183
6GQV|1|2|A|1184
6GQV|1|2|U|1185
6GQV|1|2|U|1186
6GQV|1|2|U|1187
6GQV|1|2|G|1188
*
6GQV|1|2|C|1197
6GQV|1|2|G|1198
6GQV|1|2|G|1199
6GQV|1|2|G|1200
6GQV|1|2|G|1201
6GQV|1|2|A|1202
6GQV|1|2|A|1203
6GQV|1|2|A|1204
6GQV|1|2|C|1205
6GQV|1|2|U|1206
6GQV|1|2|C|1207
6GQV|1|2|A|1208
6GQV|1|2|C|1209
*
6GQV|1|2|G|1454
6GQV|1|2|G|1455
6GQV|1|2|C|1456
6GQV|1|2|C|1457
6GQV|1|2|G|1458
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AA
- 40S ribosomal protein S10-A
- Chain AF
- 40S ribosomal protein S15
- Chain AG
- 40S ribosomal protein S16-A
- Chain AI
- 40S ribosomal protein S18-A
- Chain AK
- 40S ribosomal protein S20
- Chain AT
- 40S ribosomal protein S29-A
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