J3_6GQV_035

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CACG*CGUAACU*AG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|1|C|1631
6GQV|1|1|A|1632
6GQV|1|1|C|1633
6GQV|1|1|G|1634
*
6GQV|1|1|C|1639
6GQV|1|1|G|1640
6GQV|1|1|U|1641
6GQV|1|1|A|1642
6GQV|1|1|A|1643
6GQV|1|1|C|1644
6GQV|1|1|U|1645
*
6GQV|1|1|A|1810
6GQV|1|1|G|1811

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L27-A

Chain g

60S ribosomal protein L34-A