J3_6GQV_037
3D structure
- PDB id
- 6GQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGCUG*CACGUUCUAGCAUUCAAG*UGAU
- Length
- 27 nucleotides
- Bulged bases
- 6GQV|1|1|G|2549, 6GQV|1|1|U|2550, 6GQV|1|1|U|2551, 6GQV|1|1|C|2552, 6GQV|1|1|U|2553, 6GQV|1|1|A|2554, 6GQV|1|1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQV|1|1|A|2529
6GQV|1|1|G|2530
6GQV|1|1|C|2531
6GQV|1|1|U|2532
6GQV|1|1|G|2533
*
6GQV|1|1|C|2546
6GQV|1|1|A|2547
6GQV|1|1|C|2548
6GQV|1|1|G|2549
6GQV|1|1|U|2550
6GQV|1|1|U|2551
6GQV|1|1|C|2552
6GQV|1|1|U|2553
6GQV|1|1|A|2554
6GQV|1|1|G|2555
6GQV|1|1|C|2556
6GQV|1|1|A|2557
6GQV|1|1|U|2558
6GQV|1|1|U|2559
6GQV|1|1|C|2560
6GQV|1|1|A|2561
6GQV|1|1|A|2562
6GQV|1|1|G|2563
*
6GQV|1|1|U|2578
6GQV|1|1|G|2579
6GQV|1|1|A|2580
6GQV|1|1|U|2581
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain X
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
- Chain r
- 40S ribosomal protein S1-A
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