3D structure

PDB id
6GQV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
AGAUAAAAAAUCAAUG*CUCUUUG*CAU
Length
26 nucleotides
Bulged bases
6GQV|1|2|U|241
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GQV|1|2|A|213
6GQV|1|2|G|214
6GQV|1|2|A|215
6GQV|1|2|U|216
6GQV|1|2|A|217
6GQV|1|2|A|218
6GQV|1|2|A|219
6GQV|1|2|A|220
6GQV|1|2|A|221
6GQV|1|2|A|222
6GQV|1|2|U|223
6GQV|1|2|C|224
6GQV|1|2|A|225
6GQV|1|2|A|226
6GQV|1|2|U|227
6GQV|1|2|G|228
*
6GQV|1|2|C|237
6GQV|1|2|U|238
6GQV|1|2|C|239
6GQV|1|2|U|240
6GQV|1|2|U|241
6GQV|1|2|U|242
6GQV|1|2|G|243
*
6GQV|1|2|C|250
6GQV|1|2|A|251
6GQV|1|2|U|252

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain AB
40S ribosomal protein S11-A
Chain u
40S ribosomal protein S4-A
Chain w
40S ribosomal protein S6-A

Coloring options:

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