J3_6GQV_040

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6GQV|1|2|U|241

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|2|A|213
6GQV|1|2|G|214
6GQV|1|2|A|215
6GQV|1|2|U|216
6GQV|1|2|A|217
6GQV|1|2|A|218
6GQV|1|2|A|219
6GQV|1|2|A|220
6GQV|1|2|A|221
6GQV|1|2|A|222
6GQV|1|2|U|223
6GQV|1|2|C|224
6GQV|1|2|A|225
6GQV|1|2|A|226
6GQV|1|2|U|227
6GQV|1|2|G|228
*
6GQV|1|2|C|237
6GQV|1|2|U|238
6GQV|1|2|C|239
6GQV|1|2|U|240
6GQV|1|2|U|241
6GQV|1|2|U|242
6GQV|1|2|G|243
*
6GQV|1|2|C|250
6GQV|1|2|A|251
6GQV|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A

Chain u

40S ribosomal protein S4-A

Chain w

40S ribosomal protein S6-A