J3_6GQV_041
3D structure
- PDB id
- 6GQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGUCCAGAC*GGGUGG*CUUAGACGUUC
- Length
- 26 nucleotides
- Bulged bases
- 6GQV|1|2|A|1217, 6GQV|1|2|G|1218, 6GQV|1|2|U|1266, 6GQV|1|2|G|1445, 6GQV|1|2|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQV|1|2|G|1212
6GQV|1|2|G|1213
6GQV|1|2|U|1214
6GQV|1|2|C|1215
6GQV|1|2|C|1216
6GQV|1|2|A|1217
6GQV|1|2|G|1218
6GQV|1|2|A|1219
6GQV|1|2|C|1220
*
6GQV|1|2|G|1263
6GQV|1|2|G|1264
6GQV|1|2|G|1265
6GQV|1|2|U|1266
6GQV|1|2|G|1267
6GQV|1|2|G|1268
*
6GQV|1|2|C|1441
6GQV|1|2|U|1442
6GQV|1|2|U|1443
6GQV|1|2|A|1444
6GQV|1|2|G|1445
6GQV|1|2|A|1446
6GQV|1|2|C|1447
6GQV|1|2|G|1448
6GQV|1|2|U|1449
6GQV|1|2|U|1450
6GQV|1|2|C|1451
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AA
- 40S ribosomal protein S10-A
- Chain AC
- 40S ribosomal protein S12
- Chain AF
- 40S ribosomal protein S15
- Chain AT
- 40S ribosomal protein S29-A
- Chain AX
- Elongation factor 2
- Chain t
- 40S ribosomal protein S3
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