J3_6GSJ_016

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6GSJ|1|14|G|686, 6GSJ|1|14|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSJ_016 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0918

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

6GSJ|1|14|C|683
6GSJ|1|14|G|684
6GSJ|1|14|A|685
6GSJ|1|14|G|686
6GSJ|1|14|C|687
6GSJ|1|14|U|688
6GSJ|1|14|A|689
*
6GSJ|1|14|U|773
6GSJ|1|14|A|774
6GSJ|1|14|G|775
*
6GSJ|1|14|C|791
6GSJ|1|14|G|792
6GSJ|1|14|A|793
6GSJ|1|14|G|794

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain L5

50S ribosomal protein L34