J3_6GSK_030

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSK_030 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1886

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

6GSK|1|1G|C|936
6GSK|1|1G|A|937
6GSK|1|1G|A|938
6GSK|1|1G|G|939
*
6GSK|1|1G|C|1344
6GSK|1|1G|U|1345
6GSK|1|1G|A|1346
6GSK|1|1G|G|1347
6GSK|1|1G|U|1348
6GSK|1|1G|A|1349
6GSK|1|1G|A|1350
*
6GSK|1|1G|U|1372
6GSK|1|1G|G|1373
6GSK|1|1G|A|1374
6GSK|1|1G|A|1375
6GSK|1|1G|U|1376
6GSK|1|1G|A|1377
6GSK|1|1G|C|1378
6GSK|1|1G|G|1379

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 3L

Transfer RNA; tRNA

Chain 62

30S ribosomal protein S7

Chain 82

30S ribosomal protein S9