J3_6GSK_040

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

UAAAC*GGGUG*CG*GC*G

Length

15 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSK|1|1H|U|269
6GSK|1|1H|A|270
6GSK|1|1H|A|270|||A
6GSK|1|1H|A|270|||B
6GSK|1|1H|C|270|||C
*
6GSK|1|1H|G|270|||W
6GSK|1|1H|G|270|||X
6GSK|1|1H|G|270|||Y
6GSK|1|1H|U|270|||Z
6GSK|1|1H|G|271
*
6GSK|1|1H|C|366
6GSK|1|1H|G|370
*
6GSK|1|1H|G|271
6GSK|1|1H|C|366
*
6GSK|1|1H|G|370

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 61

50S ribosomal protein L9