J3_6GSK_044

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6GSK|1|1H|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSK_044 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0626

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6GSK|1|1H|C|1306
6GSK|1|1H|A|1307
6GSK|1|1H|A|1308
6GSK|1|1H|G|1309
*
6GSK|1|1H|C|1605
6GSK|1|1H|G|1606
6GSK|1|1H|C|1607
6GSK|1|1H|A|1608
6GSK|1|1H|A|1609
6GSK|1|1H|A|1610
6GSK|1|1H|C|1611
*
6GSK|1|1H|G|1620
6GSK|1|1H|U|1621
6GSK|1|1H|G|1622

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain P8

50S ribosomal protein L34