J3_6GSK_050
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 6GSK|1|1J|U|14, 6GSK|1|1J|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GSK_050 not in the Motif Atlas
- Homologous match to J3_7RQB_015
- Geometric discrepancy: 0.1846
- The information below is about J3_7RQB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08462.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6GSK|1|1J|C|11
6GSK|1|1J|C|12
6GSK|1|1J|A|13
6GSK|1|1J|U|14
6GSK|1|1J|A|15
6GSK|1|1J|G|16
*
6GSK|1|1J|C|68
6GSK|1|1J|G|69
*
6GSK|1|1J|U|107
6GSK|1|1J|C|108
6GSK|1|1J|G|109
Current chains
- Chain 1J
- 5S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 65
- 50S ribosomal protein L18
- Chain D5
- 50S ribosomal protein L25
- Chain E5
- 50S ribosomal protein L27
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