J3_6GSK_061
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- CCCAUAG*CG*UCGG
- Length
- 13 nucleotides
- Bulged bases
- 6GSK|1|16|U|14, 6GSK|1|16|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GSK_061 not in the Motif Atlas
- Geometric match to J3_7A0S_021
- Geometric discrepancy: 0.3133
- The information below is about J3_7A0S_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47324.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6GSK|1|16|C|10
6GSK|1|16|C|11
6GSK|1|16|C|12
6GSK|1|16|A|13
6GSK|1|16|U|14
6GSK|1|16|A|15
6GSK|1|16|G|16
*
6GSK|1|16|C|68
6GSK|1|16|G|69
*
6GSK|1|16|U|107
6GSK|1|16|C|108
6GSK|1|16|G|109
6GSK|1|16|G|110
Current chains
- Chain 16
- 5S ribosomal RNA
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain A8
- 50S ribosomal protein L18
- Chain H8
- 50S ribosomal protein L25
- Chain I8
- 50S ribosomal protein L27
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