J3_6GSL_026

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSL_026 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1276

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6GSL|1|1G|G|46
6GSL|1|1G|C|47
*
6GSL|1|1G|G|361
6GSL|1|1G|G|362
6GSL|1|1G|A|363
6GSL|1|1G|A|364
6GSL|1|1G|U|365
6GSL|1|1G|C|366
6GSL|1|1G|U|367
*
6GSL|1|1G|A|393
6GSL|1|1G|G|394
6GSL|1|1G|C|395

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 3A

30S ribosomal protein S12

Chain 7A

30S ribosomal protein S16