J3_6GSL_043

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSL_043 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0579

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6GSL|1|1H|C|698
6GSL|1|1H|A|699
6GSL|1|1H|G|700
*
6GSL|1|1H|C|732
6GSL|1|1H|G|733
6GSL|1|1H|A|734
6GSL|1|1H|A|735
6GSL|1|1H|C|736
*
6GSL|1|1H|G|760
6GSL|1|1H|A|761
6GSL|1|1H|U|762
6GSL|1|1H|G|763

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2