J3_6GSM_003

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

CAUCA*UAACUACUG*CAUUUG

Length

20 nucleotides

Bulged bases

6GSM|1|2|C|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSM|1|2|C|879
6GSM|1|2|A|880
6GSM|1|2|U|881
6GSM|1|2|C|882
6GSM|1|2|A|883
*
6GSM|1|2|U|927
6GSM|1|2|A|928
6GSM|1|2|A|929
6GSM|1|2|C|930
6GSM|1|2|U|931
6GSM|1|2|A|932
6GSM|1|2|C|933
6GSM|1|2|U|934
6GSM|1|2|G|935
*
6GSM|1|2|C|942
6GSM|1|2|A|943
6GSM|1|2|U|944
6GSM|1|2|U|945
6GSM|1|2|U|946
6GSM|1|2|G|947

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1

Chain N

KLLA0F18040p

Chain O

40S ribosomal protein S14

Chain a

40S ribosomal protein S26