J3_6GSM_007
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 6GSM|1|2|G|1198, 6GSM|1|2|G|1200, 6GSM|1|2|A|1202
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GSM_007 not in the Motif Atlas
- Geometric match to J3_8C3A_040
- Geometric discrepancy: 0.2671
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6GSM|1|2|C|1179
6GSM|1|2|U|1180
6GSM|1|2|U|1181
6GSM|1|2|A|1182
6GSM|1|2|A|1183
6GSM|1|2|U|1184
6GSM|1|2|U|1185
6GSM|1|2|U|1186
*
6GSM|1|2|G|1197
6GSM|1|2|G|1198
6GSM|1|2|G|1199
6GSM|1|2|G|1200
6GSM|1|2|A|1201
6GSM|1|2|A|1202
6GSM|1|2|A|1203
6GSM|1|2|C|1204
6GSM|1|2|U|1205
6GSM|1|2|C|1206
6GSM|1|2|A|1207
6GSM|1|2|C|1208
*
6GSM|1|2|G|1452
6GSM|1|2|G|1453
6GSM|1|2|C|1454
6GSM|1|2|C|1455
6GSM|1|2|G|1456
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain P
- KLLA0F07843p
- Chain S
- KLLA0B01562p
- Chain U
- KLLA0F25542p
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
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