J3_6GSM_008

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

CCAGAC*GGGUGG*CUUAGACG

Length

20 nucleotides

Bulged bases

6GSM|1|2|A|1216, 6GSM|1|2|G|1443

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSM|1|2|C|1214
6GSM|1|2|C|1215
6GSM|1|2|A|1216
6GSM|1|2|G|1217
6GSM|1|2|A|1218
6GSM|1|2|C|1219
*
6GSM|1|2|G|1262
6GSM|1|2|G|1263
6GSM|1|2|G|1264
6GSM|1|2|U|1265
6GSM|1|2|G|1266
6GSM|1|2|G|1267
*
6GSM|1|2|C|1439
6GSM|1|2|U|1440
6GSM|1|2|U|1441
6GSM|1|2|A|1442
6GSM|1|2|G|1443
6GSM|1|2|A|1444
6GSM|1|2|C|1445
6GSM|1|2|G|1446

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

KLLA0B08173p

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a