J3_6GSM_010

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

UGGUG*UGUC*GAUAACGA

Length

17 nucleotides

Bulged bases

6GSM|1|2|A|1320

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSM|1|2|U|1289
6GSM|1|2|G|1290
6GSM|1|2|G|1291
6GSM|1|2|U|1292
6GSM|1|2|G|1293
*
6GSM|1|2|U|1302
6GSM|1|2|G|1303
6GSM|1|2|U|1304
6GSM|1|2|C|1305
*
6GSM|1|2|G|1317
6GSM|1|2|A|1318
6GSM|1|2|U|1319
6GSM|1|2|A|1320
6GSM|1|2|A|1321
6GSM|1|2|C|1322
6GSM|1|2|G|1323
6GSM|1|2|A|1324

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

40S ribosomal protein S0

Chain C

KLLA0F09812p

Chain D

KLLA0D08305p

Chain R

KLLA0B01474p