J3_6GSM_013

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

AGAUAAAAAAUCAAUGUC*GACUCCUUG*CAU

Length

30 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSM|1|2|A|212
6GSM|1|2|G|213
6GSM|1|2|A|214
6GSM|1|2|U|215
6GSM|1|2|A|216
6GSM|1|2|A|217
6GSM|1|2|A|218
6GSM|1|2|A|219
6GSM|1|2|A|220
6GSM|1|2|A|221
6GSM|1|2|U|222
6GSM|1|2|C|223
6GSM|1|2|A|224
6GSM|1|2|A|225
6GSM|1|2|U|226
6GSM|1|2|G|227
6GSM|1|2|U|228
6GSM|1|2|C|229
*
6GSM|1|2|G|234
6GSM|1|2|A|235
6GSM|1|2|C|236
6GSM|1|2|U|237
6GSM|1|2|C|238
6GSM|1|2|C|239
6GSM|1|2|U|240
6GSM|1|2|U|241
6GSM|1|2|G|242
*
6GSM|1|2|C|249
6GSM|1|2|A|250
6GSM|1|2|U|251

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p