J3_6GSM_014

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSM_014 not in the Motif Atlas

Homologous match to J3_8C3A_035

Geometric discrepancy: 0.223

The information below is about J3_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_00811.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6GSM|1|2|A|760
6GSM|1|2|G|761
6GSM|1|2|A|762
6GSM|1|2|G|763
*
6GSM|1|2|C|773
6GSM|1|2|A|774
6GSM|1|2|G|775
*
6GSM|1|2|U|784
6GSM|1|2|C|785
6GSM|1|2|G|786
6GSM|1|2|A|787
6GSM|1|2|A|788
6GSM|1|2|U|789

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain Y

40S ribosomal protein S24