J3_6GSM_017

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

6GSM|1|2|U|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSM|1|2|C|1160
6GSM|1|2|C|1161
6GSM|1|2|A|1162
6GSM|1|2|G|1163
*
6GSM|1|2|C|1579
6GSM|1|2|U|1580
6GSM|1|2|A|1581
6GSM|1|2|G|1582
6GSM|1|2|U|1583
6GSM|1|2|A|1584
6GSM|1|2|A|1585
*
6GSM|1|2|U|1607
6GSM|1|2|G|1608
6GSM|1|2|A|1609
6GSM|1|2|U|1610
6GSM|1|2|U|1611
6GSM|1|2|A|1612
6GSM|1|2|C|1613
6GSM|1|2|G|1614

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

KLLA0D10659p

Chain Q

40S ribosomal protein S16

Chain c

40S ribosomal protein S28

Chain j

Eukaryotic translation initiation factor 2 subunit alpha