J3_6GSN_005

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

CCA*UAGUAA*UGAUUACG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSN|1|2|C|1160
6GSN|1|2|C|1161
6GSN|1|2|A|1162
*
6GSN|1|2|U|1580
6GSN|1|2|A|1581
6GSN|1|2|G|1582
6GSN|1|2|U|1583
6GSN|1|2|A|1584
6GSN|1|2|A|1585
*
6GSN|1|2|U|1607
6GSN|1|2|G|1608
6GSN|1|2|A|1609
6GSN|1|2|U|1610
6GSN|1|2|U|1611
6GSN|1|2|A|1612
6GSN|1|2|C|1613
6GSN|1|2|G|1614

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain F

KLLA0D10659p

Chain Q

40S ribosomal protein S16

Chain c

40S ribosomal protein S28