J3_6GSN_007
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUC*GCCG
- Length
- 22 nucleotides
- Bulged bases
- 6GSN|1|2|G|1198, 6GSN|1|2|G|1200, 6GSN|1|2|A|1202, 6GSN|1|2|C|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GSN|1|2|C|1179
6GSN|1|2|U|1180
6GSN|1|2|U|1181
6GSN|1|2|A|1182
6GSN|1|2|A|1183
6GSN|1|2|U|1184
6GSN|1|2|U|1185
6GSN|1|2|U|1186
*
6GSN|1|2|G|1197
6GSN|1|2|G|1198
6GSN|1|2|G|1199
6GSN|1|2|G|1200
6GSN|1|2|A|1201
6GSN|1|2|A|1202
6GSN|1|2|A|1203
6GSN|1|2|C|1204
6GSN|1|2|U|1205
6GSN|1|2|C|1206
*
6GSN|1|2|G|1453
6GSN|1|2|C|1454
6GSN|1|2|C|1455
6GSN|1|2|G|1456
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain P
- KLLA0F07843p
- Chain S
- KLLA0B01562p
- Chain U
- KLLA0F25542p
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
- Chain i
- Eukaryotic translation initiation factor 1A
- Chain l
- Eukaryotic translation initiation factor 2 subunit beta
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