J3_6GSN_010

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GUG*UGUC*GAUAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSN|1|2|G|1291
6GSN|1|2|U|1292
6GSN|1|2|G|1293
*
6GSN|1|2|U|1302
6GSN|1|2|G|1303
6GSN|1|2|U|1304
6GSN|1|2|C|1305
*
6GSN|1|2|G|1317
6GSN|1|2|A|1318
6GSN|1|2|U|1319
6GSN|1|2|A|1320
6GSN|1|2|A|1321
6GSN|1|2|C|1322

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain A

40S ribosomal protein S0

Chain C

KLLA0F09812p

Chain R

KLLA0B01474p