J3_6GSN_013

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCCUUG*CAU

Length

26 nucleotides

Bulged bases

6GSN|1|2|A|216, 6GSN|1|2|U|237, 6GSN|1|2|C|238, 6GSN|1|2|C|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSN|1|2|A|212
6GSN|1|2|G|213
6GSN|1|2|A|214
6GSN|1|2|U|215
6GSN|1|2|A|216
6GSN|1|2|A|217
6GSN|1|2|A|218
6GSN|1|2|A|219
6GSN|1|2|A|220
6GSN|1|2|A|221
6GSN|1|2|U|222
6GSN|1|2|C|223
6GSN|1|2|A|224
6GSN|1|2|A|225
6GSN|1|2|U|226
6GSN|1|2|G|227
*
6GSN|1|2|C|236
6GSN|1|2|U|237
6GSN|1|2|C|238
6GSN|1|2|C|239
6GSN|1|2|U|240
6GSN|1|2|U|241
6GSN|1|2|G|242
*
6GSN|1|2|C|249
6GSN|1|2|A|250
6GSN|1|2|U|251

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p